Latest Version (2.1.6)
Source code: here (hg19, updated May 2015)
Docker image: here (tested July 2015)
Pre-built data context: here
Whole genome scores (hg38, liftover):
1. bed format: here (~50GB)
2. Associated index file: here
Whole genome scores (hg19, non-coding):
1. Tab delimited: here (~15GB)
2. Associated index file: here
Documentation: here
Version 2.1.0:
Original published work by Fu et al, 2014
Source code: here
Pre-built data context: here
Source code & accessory files for building data context:
1. Identifying regulatory element-gene linkages: here (~40GB)
2. Identifying ultra-sensitive regions: here
Whole genome scores (hg19, non-coding):
1. Tab delimited: here (~15GB)
2. Associated index file: here
3. BigWig format: here (~9GB)
Documentation: here
This software is freely licensed under the Creative Commons license (Attribution-NonCommerical). The main aspects of this license include the following:
- The work can be made available for non-commercial use
- Derivatives can be made of the work
- Derivatives do not have to be made available under the same terms governing the original, and
- We should be cited.
Updates
✢ (May 2016) FunSeq v2.1.6 released
✢ (July 2015) FunSeq v2.1.2 docker image
✢ (May 2015) Integration of Roadmap Epigenome enhancer-gene linkages
✢ (April 2015) FunSeq v2.1.2 released
✢ (July 2014) Incorporation of noncoding scores
✢ (January 2014) FunSeq v2.1.0 released