funseq2

Latest Version (2.1.6)

   Source code: here (hg19, updated May 2015)
   Docker image: here (tested July 2015)
   Pre-built data context: here
   Whole genome scores (hg38, liftover):
      1. bed format: here (~50GB)
      2. Associated index file: here
   Whole genome scores (hg19, non-coding):
      1. Tab delimited: here (~15GB)
      2. Associated index file: here
   Documentation: here

Version 2.1.0:

Original published work by Fu et al, 2014
   Source code: here
   Pre-built data context: here
   Source code & accessory files for building data context:
      1. Identifying regulatory element-gene linkages: here (~40GB)       2. Identifying ultra-sensitive regions: here
   Whole genome scores (hg19, non-coding):
      1. Tab delimited: here (~15GB)
      2. Associated index file: here
      3. BigWig format: here (~9GB)
   Documentation: here

The Funseq2 Github can be found Here

The license of Funseq2 can be found Here

Updates

✢ (May 2016) FunSeq v2.1.6 released

✢ (July 2015) FunSeq v2.1.2 docker image

✢ (May 2015) Integration of Roadmap Epigenome enhancer-gene linkages

✢ (April 2015) FunSeq v2.1.2 released

✢ (July 2014) Incorporation of noncoding scores

✢ (January 2014) FunSeq v2.1.0 released